Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol-3-phosphate cytidylyltransferase | DXB87_04870 | Not Available | Positive | 1012786 - 1014126 | 50884.8 |
| alanine--glyoxylate aminotransferase family protein | DXB87_04875 | Not Available | Positive | 1014134 - 1015213 | 39748.2 |
| tigr00341 family protein | DXB87_04880 | Not Available | Negative | 1015362 - 1016720 | 50625.9 |
| lipopolysaccharide biosynthesis protein | DXB87_04885 | Not Available | Negative | 1016774 - 1018264 | 56390.4 |
| holliday junction branch migration dna helicase ruvb | DXB87_04890 | Not Available | Negative | 1018273 - 1019298 | 37933.5 |
| ferredoxin | DXB87_04895 | Not Available | Positive | 1019418 - 1020224 | 29113.8 |
| trna 2-thiouridine(34) synthase mnma | DXB87_04900 | Not Available | Positive | 1020242 - 1021369 | 42578.5 |
| duf4976 domain-containing protein | DXB87_04905 | Not Available | Negative | 1021446 - 1023014 | 61366.8 |
| duf4981 domain-containing protein | DXB87_04910 | Not Available | Negative | 1023039 - 1026596 | 133642.0 |
| glycoside hydrolase | DXB87_04915 | Not Available | Negative | 1026634 - 1028631 | 76369.4 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

