Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 97 protein | DXB87_04770 | Not Available | Negative | 988334 - 990226 | 71088.3 |
| hypothetical protein | DXB87_04775 | Not Available | Positive | 990546 - 991988 | 53301.2 |
| isoprenyl transferase | DXB87_04780 | Not Available | Positive | 991998 - 992747 | 28669.5 |
| outer membrane protein assembly factor bama | DXB87_04785 | Not Available | Positive | 992757 - 995408 | 101481.0 |
| omph family outer membrane protein | DXB87_04790 | Not Available | Positive | 995428 - 995943 | 19216.1 |
| omph family outer membrane protein | DXB87_04795 | Not Available | Positive | 996023 - 996577 | 21071.3 |
| glutamate racemase | DXB87_04800 | Not Available | Positive | 996681 - 997526 | 31779.4 |
| beta-glucosidase bglx | DXB87_04805 | Not Available | Negative | 997595 - 999880 | 83476.4 |
| Trna-arg | Not Available | Not Available | Positive | 1000199 - 1000273 | Not Available |
| 30s ribosomal protein s15 | DXB87_04815 | Not Available | Negative | 1000337 - 1000606 | 10383.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

