Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s9 family peptidase | DXB87_04720 | Not Available | Negative | 973251 - 975476 | 83824.8 |
| sorbitol dehydrogenase | DXB87_04725 | Not Available | Negative | 975741 - 976757 | 36313.2 |
| l-fucose:h+ symporter permease | DXB87_04730 | Not Available | Negative | 976791 - 978044 | 46801.0 |
| amidohydrolase | DXB87_04735 | Not Available | Negative | 978060 - 978983 | 35245.7 |
| aldo/keto reductase | DXB87_04740 | Not Available | Negative | 978999 - 979931 | 34748.5 |
| l-rhamnose mutarotase | DXB87_04745 | Not Available | Negative | 979944 - 980324 | 15033.2 |
| alpha-l-fucosidase | DXB87_04750 | Not Available | Negative | 980339 - 981979 | 62441.9 |
| arac family transcriptional regulator | DXB87_04755 | Not Available | Positive | 982197 - 983051 | 33680.6 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_04760 | Not Available | Negative | 983061 - 984749 | 63974.6 |
| tonb-dependent receptor | DXB87_04765 | Not Available | Negative | 984771 - 987848 | 113303.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

