Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hnh endonuclease | DXB87_04670 | Not Available | Positive | 965151 - 965693 | 20673.5 |
| dna polymerase iii subunit alpha | DXB87_04675 | Not Available | Positive | 965690 - 967867 | 82035.5 |
| 3'-5' exonuclease | DXB87_04680 | Not Available | Positive | 967874 - 968641 | 28624.4 |
| hypothetical protein | DXB87_04685 | Not Available | Positive | 968638 - 968997 | 13301.6 |
| hypothetical protein | DXB87_04690 | Not Available | Positive | 968966 - 969487 | 19390.2 |
| hypothetical protein | DXB87_04695 | Not Available | Positive | 969630 - 969929 | 11590.3 |
| hypothetical protein | DXB87_04700 | Not Available | Positive | 969952 - 970158 | 7959.65 |
| hypothetical protein | DXB87_04705 | Not Available | Positive | 970151 - 970744 | 23187.6 |
| luxr family transcriptional regulator | DXB87_04710 | Not Available | Negative | 971033 - 972094 | 40905.4 |
| hypothetical protein | DXB87_04715 | Not Available | Positive | 972406 - 972959 | 21339.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

