Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoesterase | DXB87_04620 | Not Available | Positive | 954463 - 955530 | 40273.8 |
| smc family atpase | DXB87_04625 | Not Available | Positive | 955518 - 957842 | 86829.1 |
| hypothetical protein | DXB87_04630 | Not Available | Positive | 957817 - 958302 | 18516.0 |
| rna polymerase sigma factor | DXB87_04635 | Not Available | Positive | 958447 - 959049 | 23572.0 |
| hypothetical protein | DXB87_04640 | Not Available | Positive | 959027 - 959644 | 24303.1 |
| hypothetical protein | DXB87_04645 | Not Available | Positive | 959641 - 960996 | 51866.0 |
| hypothetical protein | DXB87_04650 | Not Available | Positive | 961013 - 961375 | 14228.4 |
| hypothetical protein | DXB87_04655 | Not Available | Positive | 961631 - 962671 | 39584.2 |
| php domain-containing protein | DXB87_04660 | Not Available | Positive | 962668 - 964425 | 67981.7 |
| site-specific dna-methyltransferase | DXB87_04665 | Not Available | Positive | 964391 - 965158 | 29245.1 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

