Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DXB87_00150 | Not Available | Positive | 32968 - 35814 | 106991.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_00155 | Not Available | Positive | 35839 - 37614 | 66182.9 |
| duf1735 domain-containing protein | DXB87_00160 | Not Available | Positive | 37636 - 38655 | 37908.4 |
| hypothetical protein | DXB87_00165 | Not Available | Positive | 38674 - 40932 | 83706.5 |
| glycoside hydrolase family 43 protein | DXB87_00180 | Not Available | Negative | 45166 - 46878 | 63028.4 |
| esterase family protein | DXB87_00185 | Not Available | Positive | 47230 - 48099 | 33024.4 |
| glycoside hydrolase family 95 protein | DXB87_00190 | Not Available | Positive | 48121 - 50571 | 91663.1 |
| glycoside hydrolase | DXB87_00195 | Not Available | Positive | 50611 - 52218 | 60689.2 |
| hypothetical protein | DXB87_00200 | Not Available | Positive | 52257 - 54647 | 90658.6 |
| glycoside hydrolase family 97 protein | DXB87_00205 | Not Available | Positive | 54717 - 56684 | 72776.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

