Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transport complex subunit rsxc | DXB87_00100 | Not Available | Positive | 20215 - 21552 | 47423.4 |
| rnfabcdge type electron transport complex subunit d | DXB87_00105 | Not Available | Positive | 21565 - 22554 | 35420.6 |
| rnfabcdge type electron transport complex subunit g | DXB87_00110 | Not Available | Positive | 22551 - 23207 | 22365.2 |
| electron transport complex subunit e | DXB87_00115 | Not Available | Positive | 23220 - 23804 | 20755.7 |
| electron transport complex subunit rsxa | DXB87_00120 | Not Available | Positive | 23824 - 24426 | 21314.3 |
| udp-glucose 4-epimerase gale | DXB87_00125 | Not Available | Positive | 24601 - 25635 | 37990.7 |
| hypothetical protein | DXB87_00130 | Not Available | Negative | 25688 - 26014 | 12281.9 |
| chloride channel protein | DXB87_00135 | Not Available | Positive | 26087 - 27364 | 46087.1 |
| tonb-dependent receptor | DXB87_00140 | Not Available | Positive | 27922 - 31014 | 115452.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_00145 | Not Available | Positive | 31028 - 32926 | 73136.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

