Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXB87_04020 | Not Available | Negative | 856427 - 857662 | 48692.1 |
| hypothetical protein | DXB87_04025 | Not Available | Positive | 857695 - 857820 | 4479.34 |
| duf4080 domain-containing protein | DXB87_04030 | Not Available | Negative | 857906 - 859543 | 62417.3 |
| ribose-phosphate pyrophosphokinase | DXB87_04035 | Not Available | Negative | 859674 - 860612 | 34253.3 |
| thiamine phosphate synthase | DXB87_04040 | Not Available | Negative | 860705 - 861313 | 23051.7 |
| sigma-54-dependent fis family transcriptional regulator | DXB87_04045 | Not Available | Positive | 861739 - 863067 | 49616.1 |
| k(+)-transporting atpase subunit f | DXB87_04050 | Not Available | Positive | 863383 - 863463 | 3104.06 |
| potassium-transporting atpase subunit kdpa | DXB87_04055 | Not Available | Positive | 863494 - 865200 | 62082.6 |
| k(+)-transporting atpase subunit b | DXB87_04060 | Not Available | Positive | 865260 - 867293 | 72594.2 |
| k(+)-transporting atpase subunit c | DXB87_04065 | Not Available | Positive | 867308 - 867883 | 20806.1 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

