Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crispr-associated protein cas4 | DXB87_03970 | Not Available | Positive | 840874 - 841386 | 20128.0 |
| type i-b crispr-associated endonuclease cas1 | DXB87_03975 | Not Available | Positive | 841383 - 842399 | 39851.5 |
| crispr-associated endonuclease cas2 | DXB87_03980 | Not Available | Positive | 842401 - 842664 | 10311.8 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DXB87_03985 | Not Available | Negative | 844492 - 847719 | 119684.0 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DXB87_03990 | Not Available | Negative | 847743 - 848819 | 40085.6 |
| alpha-n-arabinofuranosidase | DXB87_03995 | Not Available | Negative | 849167 - 850243 | 40879.2 |
| Trna-thr | Not Available | Not Available | Positive | 850469 - 850544 | Not Available |
| duf4041 domain-containing protein | DXB87_04005 | Not Available | Positive | 850621 - 851979 | 52755.6 |
| atp-binding protein | DXB87_04010 | Not Available | Negative | 852170 - 855826 | 143950.0 |
| hypothetical protein | DXB87_04015 | Not Available | Negative | 855810 - 856400 | 23320.3 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

