Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DXB87_03920 | Not Available | Positive | 825406 - 828492 | 112461.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXB87_03925 | Not Available | Positive | 828518 - 830128 | 59584.4 |
| endoglycosidase | DXB87_03930 | Not Available | Positive | 830166 - 831269 | 42036.6 |
| duf1735 domain-containing protein | DXB87_03935 | Not Available | Positive | 831280 - 832458 | 44411.7 |
| helix-turn-helix domain-containing protein | DXB87_03940 | Not Available | Positive | 832649 - 833692 | 40267.0 |
| crispr-associated endoribonuclease cas6 | DXB87_03945 | Not Available | Positive | 833704 - 834483 | 30491.3 |
| hypothetical protein | DXB87_03950 | Not Available | Positive | 834494 - 836395 | 73405.3 |
| crispr-associated protein | DXB87_03955 | Not Available | Positive | 836415 - 837353 | 35637.3 |
| type i-b crispr-associated protein cas5 | DXB87_03960 | Not Available | Positive | 837355 - 838122 | 30245.4 |
| crispr-associated helicase cas3' | DXB87_03965 | Not Available | Positive | 838140 - 840863 | 106024.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

