Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXB87_03765 | Not Available | Negative | 787947 - 788330 | 14720.6 |
| rna polymerase sigma factor | DXB87_03770 | Not Available | Negative | 788376 - 788927 | 21758.8 |
| ribonuclease z | DXB87_03775 | Not Available | Negative | 789007 - 789921 | 34404.5 |
| succinate coa transferase | DXB87_03780 | Not Available | Negative | 789924 - 791417 | 54250.7 |
| 4fe-4s dicluster domain-containing protein | DXB87_03785 | Not Available | Positive | 791685 - 793196 | 54991.3 |
| aldo/keto reductase | DXB87_03790 | Not Available | Positive | 793230 - 794603 | 52126.2 |
| duf1893 domain-containing protein | DXB87_03795 | Not Available | Positive | 794603 - 795049 | 16496.9 |
| ecf transporter s component | DXB87_03800 | Not Available | Positive | 795059 - 795559 | 18101.9 |
| dead/deah box helicase | DXB87_03805 | Not Available | Positive | 795848 - 798751 | 111662.0 |
| hypothetical protein | DXB87_03810 | Not Available | Positive | 798748 - 799434 | 26786.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

