Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXB87_03705 | Not Available | Positive | 776915 - 777133 | 8098.9 |
| hypothetical protein | DXB87_03710 | Not Available | Negative | 777257 - 777601 | 13412.1 |
| luxr family transcriptional regulator | DXB87_03715 | Not Available | Positive | 777807 - 778568 | 29467.2 |
| hypothetical protein | DXB87_03720 | Not Available | Negative | 778509 - 778859 | 13400.3 |
| tonb-dependent receptor | DXB87_03725 | Not Available | Negative | 778863 - 781190 | 86955.4 |
| peptidase s41 | DXB87_03730 | Not Available | Negative | 781429 - 782739 | 49949.5 |
| hypothetical protein | DXB87_03735 | Not Available | Negative | 782828 - 785395 | 96996.0 |
| glpgli family protein | DXB87_03740 | Not Available | Negative | 785405 - 786244 | 32406.9 |
| Trna-ser | Not Available | Not Available | Positive | 787294 - 787378 | Not Available |
| hypothetical protein | DXB87_03760 | Not Available | Negative | 787481 - 787939 | 18161.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

