Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l11 methyltransferase | DXB87_03650 | Not Available | Negative | 766379 - 767224 | 31466.3 |
| hypothetical protein | DXB87_03655 | Not Available | Positive | 767457 - 768452 | 37617.4 |
| acyloxyacyl hydrolase | DXB87_03660 | Not Available | Positive | 768439 - 769671 | 45557.6 |
| thiol peroxidase | DXB87_03665 | Not Available | Negative | 769691 - 770245 | 19835.7 |
| laci family transcriptional regulator | DXB87_03670 | Not Available | Negative | 770505 - 771158 | 24536.9 |
| thioredoxin | DXB87_03675 | Not Available | Negative | 771291 - 773192 | 71284.4 |
| phosphoribosylformylglycinamidine synthase | DXB87_03680 | Not Available | Positive | 773479 - 774033 | 21339.3 |
| m20/m25/m40 family metallo-hydrolase | DXB87_03685 | Not Available | Negative | 774113 - 775660 | 58233.8 |
| duf3873 domain-containing protein | DXB87_03695 | Not Available | Positive | 776391 - 776603 | 8373.95 |
| hypothetical protein | DXB87_03700 | Not Available | Positive | 776600 - 776863 | 10226.3 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

