Phocaeicola plebeius

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius is a Gram-negative, non-sporulating rod-shaped bacterium characterized as a chemoheterotroph, thriving in anaerobic environments. This microbe is primarily found within the intestinal microflora of animals, where it plays a role in the digestive processes and overall gut health. As an anaerobe, Phocaeicola plebeius is adapted to environments devoid of oxygen, which is typical of the intestinal tract, allowing it to efficiently utilize organic compounds derived from the host's diet. The presence of Phocaeicola plebeius in the gut microbiome suggests a potential interaction with other microbial species, contributing to the complex ecosystem of the intestinal environment. By participating in the fermentation of carbohydrates and the breakdown of proteins, this bacterium may influence nutrient absorption and gut health in its host. Furthermore, its classification within the intestinal microflora highlights its potential role in maintaining the balance of microbial communities, which is essential for preventing dysbiosis and supporting the immune system. Overall, Phocaeicola plebeius exemplifies the intricate relationships between intestinal microorganisms and their hosts, emphasizing the importance of anaerobic bacteria in sustaining gut homeostasis and aiding in digestion.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome

Gene Summary

Adenine Count

1073471 bp

Thymine Count

1083807 bp

Guanine Count

870519 bp

Cytosine Count

860999 bp

Genome Length

3889096 bp

Protein-coding Genes

3270 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive11413 - 11521Not Available
dipeptidaseDXB87_00055Not AvailableNegative10554 - 1190950463.3
chorismate synthaseDXB87_00060Not AvailableNegative11921 - 1300039429.9
tpm domain-containing proteinDXB87_00065Not AvailableNegative13026 - 1394632939.6
lema family proteinDXB87_00070Not AvailableNegative13962 - 1454321881.9
elongation factor 4DXB87_00075Not AvailablePositive14649 - 1643066363.4
sigma-70 family rna polymerase sigma factorDXB87_00080Not AvailablePositive16715 - 1731724256.5
threonine ammonia-lyaseDXB87_00085Not AvailablePositive17434 - 1863042745.9
rsec/mucc family positive regulator of sigma(e)DXB87_00090Not AvailablePositive18774 - 1919915530.3
fe-s cluster domain-containing proteinDXB87_00095Not AvailablePositive19216 - 2018133277.5

Displaying genes 61 – 70 of 15642 in total

Metabolites

353 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm0000243heteropyrithiamineC11H13N4Chemical structure of heteropyrithiamineNot available
Average201.252Da
Monoisotopic201.113472855Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 353 metabolites

Health Effects

No health effects information available for this bacterium.