Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5s ribosomal rna | Not Available | Not Available | Positive | 11413 - 11521 | Not Available |
| dipeptidase | DXB87_00055 | Not Available | Negative | 10554 - 11909 | 50463.3 |
| chorismate synthase | DXB87_00060 | Not Available | Negative | 11921 - 13000 | 39429.9 |
| tpm domain-containing protein | DXB87_00065 | Not Available | Negative | 13026 - 13946 | 32939.6 |
| lema family protein | DXB87_00070 | Not Available | Negative | 13962 - 14543 | 21881.9 |
| elongation factor 4 | DXB87_00075 | Not Available | Positive | 14649 - 16430 | 66363.4 |
| sigma-70 family rna polymerase sigma factor | DXB87_00080 | Not Available | Positive | 16715 - 17317 | 24256.5 |
| threonine ammonia-lyase | DXB87_00085 | Not Available | Positive | 17434 - 18630 | 42745.9 |
| rsec/mucc family positive regulator of sigma(e) | DXB87_00090 | Not Available | Positive | 18774 - 19199 | 15530.3 |
| fe-s cluster domain-containing protein | DXB87_00095 | Not Available | Positive | 19216 - 20181 | 33277.5 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

