Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | DXB87_03400 | Not Available | Negative | 711883 - 712644 | 28738.8 |
| nudix hydrolase | DXB87_03405 | Not Available | Positive | 713007 - 713729 | 28334.5 |
| carbohydrate kinase | DXB87_03410 | Not Available | Positive | 713750 - 715237 | 53411.5 |
| xylose isomerase | DXB87_03415 | Not Available | Positive | 715274 - 716590 | 49118.2 |
| d-xylose transporter xyle | DXB87_03420 | Not Available | Positive | 716689 - 718170 | 54107.1 |
| Trna-met | Not Available | Not Available | Positive | 718215 - 718291 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 718347 - 718423 | Not Available |
| hypothetical protein | DXB87_03435 | Not Available | Positive | 718743 - 719126 | 15035.6 |
| yjgp/yjgq family permease | DXB87_03440 | Not Available | Positive | 719204 - 721096 | 72496.1 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | DXB87_03445 | Not Available | Positive | 721113 - 722327 | 44939.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

