Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoacyl-histidine dipeptidase | DXB87_03350 | Not Available | Negative | 696185 - 697642 | 53428.7 |
| upf0104 family protein | DXB87_03355 | Not Available | Negative | 697678 - 698685 | 37175.4 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | DXB87_03360 | Not Available | Positive | 698761 - 699564 | 30478.1 |
| magnesium transporter | DXB87_03365 | Not Available | Positive | 699620 - 700960 | 49634.8 |
| duf349 domain-containing protein | DXB87_03370 | Not Available | Positive | 701267 - 703072 | 70181.2 |
| hypothetical protein | DXB87_03375 | Not Available | Positive | 703379 - 705712 | 84019.8 |
| dna/rna non-specific endonuclease | DXB87_03380 | Not Available | Positive | 705734 - 706930 | 44933.5 |
| endonuclease/exonuclease/phosphatase family protein | DXB87_03385 | Not Available | Positive | 706943 - 707983 | 39464.2 |
| hypothetical protein | DXB87_03390 | Not Available | Positive | 708001 - 710751 | 104936.0 |
| hypothetical protein | DXB87_03395 | Not Available | Positive | 710774 - 711757 | 36733.3 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

