Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| magnesium and cobalt transport protein cora | DXB87_03180 | Not Available | Positive | 656751 - 657791 | 40370.7 |
| endonuclease iii | DXB87_03185 | Not Available | Positive | 657826 - 658473 | 24218.8 |
| merr family transcriptional regulator | DXB87_03190 | Not Available | Negative | 658538 - 658885 | 13701.8 |
| m23 family peptidase | DXB87_03195 | Not Available | Negative | 658901 - 659866 | 36401.8 |
| alanine--trna ligase | DXB87_03200 | Not Available | Positive | 660000 - 662618 | 97089.0 |
| mate family efflux transporter | DXB87_03205 | Not Available | Positive | 662764 - 664107 | 48759.9 |
| hypothetical protein | DXB87_03230 | Not Available | Positive | 668146 - 668733 | 22255.4 |
| dna gyrase/topoisomerase iv subunit a | DXB87_03235 | Not Available | Positive | 668972 - 671617 | 101101.0 |
| duf3316 domain-containing protein | DXB87_03240 | Not Available | Positive | 671624 - 672472 | 32211.4 |
| peptidase s41 | DXB87_03245 | Not Available | Positive | 672474 - 673499 | 38966.8 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

