Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | DXB87_03030 | Not Available | Positive | 622086 - 623420 | 50151.3 |
| rrna cytosine-c5-methyltransferase | DXB87_03035 | Not Available | Negative | 623611 - 625023 | 52488.8 |
| thymidylate synthase | DXB87_03040 | Not Available | Positive | 625098 - 625892 | 30609.6 |
| dihydrofolate reductase | DXB87_03045 | Not Available | Positive | 625911 - 626405 | 18850.4 |
| asnc family transcriptional regulator | DXB87_03050 | Not Available | Negative | 626417 - 626896 | 18127.0 |
| hybrid sensor histidine kinase/response regulator | DXB87_03055 | Not Available | Negative | 627087 - 631397 | 163192.0 |
| l-rhamnose mutarotase | DXB87_03060 | Not Available | Negative | 631496 - 631810 | 12356.7 |
| rhamnogalacturonan acetylesterase | DXB87_03065 | Not Available | Negative | 631822 - 633453 | 61204.5 |
| rhamnogalacturonan acetylesterase | DXB87_03070 | Not Available | Negative | 633686 - 634915 | 46620.9 |
| glycoside hydrolase family 28 protein | DXB87_03075 | Not Available | Positive | 635195 - 636580 | 52616.8 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

