Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXB87_02930 | Not Available | Positive | 597597 - 599336 | 64255.2 |
| hypothetical protein | DXB87_02935 | Not Available | Positive | 599406 - 600275 | 33264.1 |
| peptidase s41 | DXB87_02940 | Not Available | Positive | 600332 - 601702 | 50969.3 |
| tolc family protein | DXB87_02945 | Not Available | Positive | 601840 - 603333 | 54535.1 |
| biotin/lipoyl-binding protein | DXB87_02950 | Not Available | Positive | 603343 - 604326 | 35874.2 |
| abc transporter permease | DXB87_02955 | Not Available | Positive | 604333 - 605508 | 43991.6 |
| abc transporter permease | DXB87_02960 | Not Available | Positive | 605521 - 606777 | 47315.5 |
| energy transducer tonb | DXB87_02965 | Not Available | Positive | 606906 - 608219 | 48854.4 |
| s9 family peptidase | DXB87_02970 | Not Available | Positive | 608244 - 610442 | 83315.1 |
| lipoyl synthase | DXB87_02975 | Not Available | Positive | 610520 - 611368 | 31597.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

