Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribulose-phosphate 3-epimerase | DXB87_02880 | Not Available | Negative | 587070 - 587726 | 23984.6 |
| port family protein | DXB87_02885 | Not Available | Negative | 587799 - 589091 | 48186.6 |
| sigma-70 family rna polymerase sigma factor | DXB87_02890 | Not Available | Negative | 589095 - 589637 | 20582.7 |
| hypothetical protein | DXB87_02895 | Not Available | Positive | 589791 - 590510 | 26711.7 |
| methionyl-trna formyltransferase | DXB87_02900 | Not Available | Negative | 590526 - 591497 | 36158.1 |
| cbs domain-containing protein | DXB87_02905 | Not Available | Negative | 591513 - 593312 | 66464.2 |
| threonylcarbamoyl-amp synthase | DXB87_02910 | Not Available | Negative | 593325 - 593891 | 20736.1 |
| dna polymerase iv | DXB87_02915 | Not Available | Positive | 594016 - 595122 | 41828.6 |
| mrp family atp-binding protein | DXB87_02920 | Not Available | Negative | 595588 - 596685 | 39398.8 |
| trna (guanosine(46)-n7)-methyltransferase trmb | DXB87_02925 | Not Available | Negative | 596705 - 597463 | 29622.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

