Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s6 | DXB87_02830 | Not Available | Negative | 573981 - 574328 | 13588.4 |
| marr family transcriptional regulator | DXB87_02835 | Not Available | Positive | 574534 - 574980 | 17430.3 |
| dna-binding response regulator | DXB87_02840 | Not Available | Negative | 575422 - 576120 | 26812.5 |
| sensor histidine kinase | DXB87_02845 | Not Available | Negative | 576124 - 577674 | 59631.4 |
| elongation factor g | DXB87_02850 | Not Available | Negative | 577940 - 580099 | 80768.6 |
| coproporphyrinogen iii oxidase family protein | DXB87_02855 | Not Available | Positive | 580318 - 581451 | 43765.8 |
| phosphoglucosamine mutase | DXB87_02860 | Not Available | Negative | 581807 - 583195 | 50471.6 |
| duf4827 domain-containing protein | DXB87_02865 | Not Available | Negative | 583221 - 583901 | 25235.0 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DXB87_02870 | Not Available | Negative | 583995 - 585032 | 39110.2 |
| comec family competence protein | DXB87_02875 | Not Available | Negative | 585093 - 587066 | 74540.5 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

