Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXB87_02615 | Not Available | Negative | 529333 - 531306 | 74499.8 |
| potassium/proton antiporter | DXB87_02620 | Not Available | Positive | 532023 - 533483 | 53686.3 |
| rna degradosome polyphosphate kinase | DXB87_02625 | Not Available | Negative | 533480 - 535537 | 80513.4 |
| metallophosphoesterase | DXB87_02630 | Not Available | Positive | 535601 - 536092 | 18831.6 |
| dtdp-glucose 4,6-dehydratase | DXB87_02635 | Not Available | Positive | 536156 - 537295 | 43679.8 |
| aspartate--ammonia ligase | DXB87_02640 | Not Available | Positive | 537503 - 538543 | 39736.2 |
| uracil-dna glycosylase | DXB87_02645 | Not Available | Negative | 538643 - 539305 | 24907.6 |
| methionine synthase | DXB87_02650 | Not Available | Negative | 539324 - 542086 | 101412.0 |
| ssra-binding protein | DXB87_02655 | Not Available | Negative | 542111 - 542569 | 17983.9 |
| duf1282 domain-containing protein | DXB87_02660 | Not Available | Negative | 542569 - 543138 | 21600.8 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

