Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family nad(p)-dependent oxidoreductase | DXB87_02460 | Not Available | Negative | 489983 - 490744 | 27098.0 |
| hypothetical protein | DXB87_02465 | Not Available | Negative | 490775 - 491008 | 8638.55 |
| peptidylprolyl isomerase | DXB87_02470 | Not Available | Positive | 491147 - 491737 | 21499.1 |
| atpase | DXB87_02475 | Not Available | Positive | 491822 - 492676 | 31736.3 |
| simpl domain-containing protein | DXB87_02480 | Not Available | Positive | 492871 - 493575 | 26269.4 |
| 30s ribosomal protein s1 | DXB87_02485 | Not Available | Positive | 493775 - 495559 | 66546.6 |
| antibiotic biosynthesis monooxygenase | DXB87_02490 | Not Available | Positive | 495658 - 495933 | 10432.6 |
| threonine/serine exporter family protein | DXB87_02495 | Not Available | Negative | 496065 - 497450 | 51388.7 |
| nitrous oxide-stimulated promoter family protein | DXB87_02500 | Not Available | Positive | 497536 - 497841 | 12500.5 |
| efflux rnd transporter periplasmic adaptor subunit | DXB87_02505 | Not Available | Positive | 498021 - 499217 | 44782.1 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

