Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pspc domain-containing protein | DXB87_02405 | Not Available | Positive | 475930 - 477009 | 39734.1 |
| molecular chaperone dnak | DXB87_02410 | Not Available | Positive | 477200 - 479116 | 68141.9 |
| helix-turn-helix domain-containing protein | DXB87_02415 | Not Available | Positive | 479334 - 479894 | 21758.8 |
| sir2 family protein | DXB87_02420 | Not Available | Positive | 480011 - 481045 | 38732.6 |
| duf87 domain-containing protein | DXB87_02425 | Not Available | Positive | 481049 - 482773 | 63850.7 |
| site-specific integrase | DXB87_02430 | Not Available | Positive | 482804 - 484060 | 48210.4 |
| duf3987 domain-containing protein | DXB87_02440 | Not Available | Positive | 484711 - 486081 | 51660.6 |
| hypothetical protein | DXB87_02445 | Not Available | Positive | 486197 - 487210 | 38609.7 |
| recombinase | DXB87_02450 | Not Available | Positive | 487360 - 488907 | 59688.7 |
| restriction endonuclease subunit s | DXB87_02455 | Not Available | Positive | 489032 - 489688 | 24837.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

