Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1573 domain-containing protein | DXB87_02345 | Not Available | Negative | 464165 - 464569 | 14627.7 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DXB87_02350 | Not Available | Negative | 464672 - 466882 | 85004.8 |
| duf4301 family protein | DXB87_02355 | Not Available | Positive | 467018 - 468541 | 56862.9 |
| arac family transcriptional regulator | DXB87_02360 | Not Available | Negative | 468623 - 469540 | 35304.5 |
| acrb/acrd/acrf family protein | DXB87_02370 | Not Available | Positive | 471200 - 471673 | 17383.9 |
| tolc family protein | DXB87_02380 | Not Available | Positive | 472153 - 473442 | 47667.3 |
| duf340 domain-containing protein | DXB87_02385 | Not Available | Positive | 473965 - 474243 | 9781.69 |
| lysine exporter lyso family protein | DXB87_02390 | Not Available | Positive | 474240 - 474872 | 22676.6 |
| gnat family n-acetyltransferase | DXB87_02395 | Not Available | Negative | 474923 - 475420 | 19567.6 |
| padr family transcriptional regulator | DXB87_02400 | Not Available | Positive | 475588 - 475917 | 12602.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

