Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylformylglycinamidine synthase | DXB87_02295 | Not Available | Negative | 449771 - 453478 | 137429.0 |
| anaerobic c4-dicarboxylate transporter | DXB87_02300 | Not Available | Positive | 453623 - 454933 | 45996.1 |
| lyse family translocator | DXB87_02305 | Not Available | Positive | 455201 - 455860 | 24058.4 |
| duf4924 family protein | DXB87_02310 | Not Available | Positive | 455867 - 456412 | 21294.1 |
| dtdp-4-dehydrorhamnose reductase | DXB87_02315 | Not Available | Positive | 456426 - 457283 | 31969.0 |
| peptide chain release factor 3 | DXB87_02320 | Not Available | Positive | 457286 - 458857 | 59844.5 |
| mate family efflux transporter | DXB87_02325 | Not Available | Negative | 458926 - 460257 | 49495.8 |
| 30s ribosomal protein s16 | DXB87_02330 | Not Available | Negative | 460366 - 460908 | 19554.1 |
| alpha/beta hydrolase | DXB87_02335 | Not Available | Negative | 461015 - 461863 | 31304.3 |
| oligopeptide transporter, opt family | DXB87_02340 | Not Available | Negative | 461883 - 463871 | 70316.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

