Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4133 domain-containing protein | DXB87_01940 | Not Available | Positive | 393533 - 393895 | 13864.5 |
| trag family conjugative transposon atpase | DXB87_01945 | Not Available | Positive | 393892 - 396405 | 96330.6 |
| duf4141 domain-containing protein | DXB87_01950 | Not Available | Positive | 396417 - 397043 | 23236.0 |
| conjugative transposon protein traj | DXB87_01955 | Not Available | Positive | 397063 - 398058 | 36778.0 |
| conjugative transposon protein trak | DXB87_01960 | Not Available | Positive | 398079 - 398702 | 23884.7 |
| duf3989 domain-containing protein | DXB87_01965 | Not Available | Positive | 398707 - 399003 | 11476.1 |
| conjugative transposon protein tram | DXB87_01970 | Not Available | Positive | 398981 - 400294 | 47728.6 |
| conjugative transposon protein tran | DXB87_01975 | Not Available | Positive | 400328 - 401263 | 35297.6 |
| conjugal transfer protein | DXB87_01980 | Not Available | Positive | 401267 - 401848 | 21795.3 |
| duf3872 domain-containing protein | DXB87_01985 | Not Available | Positive | 401862 - 402320 | 17562.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

