Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXB87_01665 | Not Available | Positive | 346054 - 346362 | 11595.0 |
| duf3408 domain-containing protein | DXB87_01670 | Not Available | Positive | 346463 - 346879 | 15426.6 |
| duf3408 domain-containing protein | DXB87_01675 | Not Available | Positive | 346909 - 347295 | 14092.2 |
| para family protein | DXB87_01680 | Not Available | Positive | 347323 - 348111 | 30149.6 |
| amidoligase enzyme | DXB87_01685 | Not Available | Positive | 348259 - 349188 | 35426.6 |
| hypothetical protein | DXB87_01690 | Not Available | Positive | 349185 - 349418 | 9007.59 |
| isas1 family transposase | DXB87_01695 | Not Available | Negative | 350020 - 351150 | 42847.9 |
| dna mismatch endonuclease vsr | DXB87_01700 | Not Available | Negative | 351664 - 352080 | 16102.8 |
| hypothetical protein | DXB87_01705 | Not Available | Negative | 352089 - 353627 | 58269.3 |
| atp-binding protein | DXB87_01710 | Not Available | Negative | 353632 - 356604 | 114444.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

