Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4465 domain-containing protein | DXB87_01610 | Not Available | Positive | 333650 - 334567 | 33766.0 |
| cell surface protein | DXB87_01615 | Not Available | Positive | 334632 - 336413 | 66417.8 |
| epidermal growth-factor receptor (egfr) l domain protein | DXB87_01620 | Not Available | Positive | 336428 - 338518 | 76042.4 |
| ynce family protein | DXB87_01625 | Not Available | Positive | 338547 - 339647 | 42574.6 |
| tonb-dependent receptor | DXB87_01630 | Not Available | Positive | 339666 - 341744 | 78463.8 |
| iron abc transporter substrate-binding protein | DXB87_01635 | Not Available | Positive | 341756 - 342895 | 41659.7 |
| iron abc transporter permease | DXB87_01640 | Not Available | Positive | 342896 - 343876 | 34119.5 |
| abc transporter atp-binding protein | DXB87_01645 | Not Available | Positive | 343840 - 344631 | 29565.2 |
| duf2284 domain-containing protein | DXB87_01650 | Not Available | Positive | 344628 - 345194 | 21855.0 |
| hypothetical protein | DXB87_01655 | Not Available | Negative | 345123 - 345395 | 10333.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

