Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate kinase | DXB87_01035 | Not Available | Negative | 254559 - 255884 | 49454.2 |
| atp-binding cassette domain-containing protein | DXB87_01040 | Not Available | Negative | 256000 - 256680 | 25643.0 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | DXB87_01045 | Not Available | Negative | 256690 - 257301 | 23525.2 |
| imidazole glycerol phosphate synthase subunit hisf | DXB87_01050 | Not Available | Negative | 257337 - 258092 | 27333.5 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DXB87_01055 | Not Available | Negative | 258115 - 258837 | 26214.7 |
| imidazole glycerol phosphate synthase subunit hish | DXB87_01060 | Not Available | Negative | 258860 - 259450 | 22107.7 |
| Trna-asp | Not Available | Not Available | Positive | 259712 - 259788 | Not Available |
| site-specific integrase | DXB87_01070 | Not Available | Positive | 260003 - 261142 | 44981.3 |
| recombinase | DXB87_01075 | Not Available | Negative | 261194 - 262012 | 31347.8 |
| hypothetical protein | DXB87_01080 | Not Available | Negative | 262015 - 263271 | 48261.5 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

