Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | DXB87_00985 | Not Available | Negative | 242226 - 243050 | 30862.0 |
| replicative dna helicase | DXB87_00990 | Not Available | Positive | 243153 - 244715 | 58164.0 |
| phenylalanine--trna ligase subunit beta | DXB87_00995 | Not Available | Positive | 244817 - 247279 | 90705.6 |
| hypothetical protein | DXB87_01000 | Not Available | Positive | 247289 - 247531 | 9277.38 |
| yebc/pmpr family dna-binding regulatory protein | DXB87_01005 | Not Available | Positive | 247555 - 248292 | 27740.6 |
| tigr03905 family tscpd domain-containing protein | DXB87_01010 | Not Available | Positive | 248398 - 248637 | 8555.45 |
| duf3667 domain-containing protein | DXB87_01015 | Not Available | Negative | 248728 - 250179 | 56881.7 |
| crp/fnr family transcriptional regulator | DXB87_01020 | Not Available | Negative | 250263 - 250964 | 26679.6 |
| hypothetical protein | DXB87_01025 | Not Available | Positive | 251077 - 253275 | 85039.7 |
| diaminopimelate decarboxylase | DXB87_01030 | Not Available | Negative | 253291 - 254451 | 42785.4 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

