Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DXB87_00935 | Not Available | Positive | 230507 - 231601 | 40335.3 |
| ndp-sugar synthase | DXB87_00940 | Not Available | Positive | 231603 - 232310 | 26509.9 |
| hypothetical protein | DXB87_00945 | Not Available | Positive | 232373 - 233239 | 32528.8 |
| cdp-alcohol phosphatidyltransferase family protein | DXB87_00950 | Not Available | Positive | 233239 - 234186 | 37269.4 |
| upf0104 family protein | DXB87_00955 | Not Available | Positive | 234186 - 235193 | 38496.2 |
| had family hydrolase | DXB87_00960 | Not Available | Positive | 235186 - 235908 | 27154.5 |
| sugar mfs transporter | DXB87_00965 | Not Available | Positive | 235922 - 237127 | 44365.2 |
| rlua family pseudouridine synthase | DXB87_00970 | Not Available | Negative | 237906 - 239525 | 61736.2 |
| class c beta-lactamase-related serine hydrolase | DXB87_00975 | Not Available | Positive | 239755 - 240915 | 44513.3 |
| peptidase e | DXB87_00980 | Not Available | Negative | 241037 - 242152 | 41641.4 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

