Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 25 protein | DXB87_00885 | Not Available | Positive | 217294 - 218208 | 35752.8 |
| atp-dependent chaperone clpb | DXB87_00890 | Not Available | Negative | 218322 - 220910 | 97254.6 |
| hypothetical protein | DXB87_00895 | Not Available | Positive | 221319 - 221699 | 14182.1 |
| hypothetical protein | DXB87_00900 | Not Available | Positive | 221739 - 222320 | 21545.0 |
| lysr family transcriptional regulator | DXB87_00905 | Not Available | Positive | 222333 - 223229 | 33881.0 |
| mfs transporter | DXB87_00910 | Not Available | Negative | 223252 - 224520 | 47460.8 |
| spoiid/lytb domain-containing protein | DXB87_00915 | Not Available | Negative | 224533 - 225843 | 49773.9 |
| duf4922 domain-containing protein | DXB87_00920 | Not Available | Negative | 225849 - 228281 | 92403.3 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DXB87_00925 | Not Available | Positive | 228368 - 229426 | 39954.3 |
| duf4837 family protein | DXB87_00930 | Not Available | Positive | 229440 - 230504 | 40852.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

