Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsenate reductase arsc | DXB87_00835 | Not Available | Positive | 205491 - 205946 | 16518.6 |
| isoleucine--trna ligase | DXB87_00840 | Not Available | Positive | 206084 - 209572 | 132224.0 |
| trar/dksa family transcriptional regulator | DXB87_00845 | Not Available | Positive | 209636 - 210016 | 14347.1 |
| lipoprotein signal peptidase | DXB87_00850 | Not Available | Positive | 210137 - 210775 | 24264.9 |
| duf4296 domain-containing protein | DXB87_00855 | Not Available | Positive | 210772 - 211632 | 32919.4 |
| hypothetical protein | DXB87_00860 | Not Available | Positive | 211638 - 211964 | 12594.1 |
| rna methyltransferase | DXB87_00865 | Not Available | Negative | 211959 - 212717 | 28024.9 |
| hypothetical protein | DXB87_00870 | Not Available | Positive | 212822 - 215131 | 89446.4 |
| hypothetical protein | DXB87_00875 | Not Available | Positive | 215148 - 215384 | 9334.3 |
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DXB87_00880 | Not Available | Positive | 215489 - 217132 | 59872.8 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

