Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase | DXB87_00785 | Not Available | Negative | 198252 - 199103 | 31474.4 |
| paai family thioesterase | DXB87_00790 | Not Available | Negative | 199359 - 199844 | 18782.4 |
| dabb family protein | DXB87_00795 | Not Available | Negative | 199857 - 200156 | 11034.3 |
| uridine kinase | DXB87_00800 | Not Available | Positive | 200227 - 200838 | 23316.5 |
| lytic transglycosylase f | DXB87_00805 | Not Available | Positive | 200835 - 202211 | 52091.4 |
| arsr family transcriptional regulator | DXB87_00810 | Not Available | Positive | 202559 - 202885 | 12364.2 |
| thioredoxin | DXB87_00815 | Not Available | Positive | 203003 - 203410 | 15313.3 |
| sulfite exporter taue/safe family protein | DXB87_00820 | Not Available | Positive | 203423 - 204130 | 25646.5 |
| thioredoxin family protein | DXB87_00825 | Not Available | Positive | 204164 - 204400 | 8656.82 |
| permease | DXB87_00830 | Not Available | Positive | 204504 - 205472 | 35403.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

