Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate lyase | DXB87_09745 | Not Available | Negative | 2190107 - 2191447 | 50611.3 |
| srpbcc family protein | DXB87_09750 | Not Available | Negative | 2191488 - 2191916 | 16384.2 |
| orotate phosphoribosyltransferase | DXB87_09755 | Not Available | Negative | 2192045 - 2192680 | 23330.3 |
| comf family protein | DXB87_09760 | Not Available | Negative | 2192782 - 2193471 | 25646.4 |
| recx family transcriptional regulator | DXB87_09765 | Not Available | Negative | 2193455 - 2193934 | 18995.8 |
| peptide chain release factor n(5)-glutamine methyltransferase | DXB87_09770 | Not Available | Negative | 2193931 - 2194773 | 32163.5 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DXB87_09775 | Not Available | Positive | 2194806 - 2195846 | 38598.0 |
| tonb-dependent receptor | DXB87_09780 | Not Available | Negative | 2195849 - 2197510 | 62299.7 |
| tetratricopeptide repeat protein | DXB87_09785 | Not Available | Negative | 2197512 - 2200529 | 114723.0 |
| nudix domain-containing protein | DXB87_09790 | Not Available | Negative | 2200538 - 2201068 | 19805.6 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

