Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell filamentation protein fic | DXB87_09525 | Not Available | Positive | 2143892 - 2144893 | 39143.5 |
| atp-dependent helicase | DXB87_09530 | Not Available | Positive | 2145123 - 2146439 | 49272.8 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | DXB87_09535 | Not Available | Positive | 2146691 - 2147761 | 39777.9 |
| 3-phosphoglycerate dehydrogenase | DXB87_09540 | Not Available | Positive | 2147836 - 2148759 | 33500.5 |
| hypothetical protein | DXB87_09545 | Not Available | Positive | 2148779 - 2148985 | 7830.85 |
| duf1015 domain-containing protein | DXB87_09550 | Not Available | Positive | 2148972 - 2150219 | 47001.0 |
| arylsulfatase | DXB87_09555 | Not Available | Negative | 2150401 - 2151927 | 57692.5 |
| yigz family protein | DXB87_09560 | Not Available | Positive | 2152032 - 2152634 | 22823.7 |
| murein l,d-transpeptidase | DXB87_09565 | Not Available | Positive | 2152751 - 2153788 | 39412.2 |
| hypothetical protein | DXB87_09570 | Not Available | Positive | 2153889 - 2154605 | 26205.1 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

