Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage portal protein | DXB87_09305 | Not Available | Negative | 2103187 - 2104776 | 60852.4 |
| hypothetical protein | DXB87_09310 | Not Available | Negative | 2104782 - 2105216 | 16149.7 |
| integration host factor subunit beta | DXB87_09315 | Not Available | Positive | 2105353 - 2105634 | 10323.6 |
| hypothetical protein | DXB87_09320 | Not Available | Negative | 2105658 - 2105894 | 8454.03 |
| histone h1 | DXB87_09325 | Not Available | Negative | 2106191 - 2106367 | 6590.03 |
| hypothetical protein | DXB87_09330 | Not Available | Negative | 2106546 - 2107823 | 49663.2 |
| sensor protein kdpd | DXB87_09340 | Not Available | Positive | 2108855 - 2109985 | 43165.6 |
| hamp domain-containing protein | DXB87_09345 | Not Available | Positive | 2109992 - 2111458 | 54435.6 |
| hypothetical protein | DXB87_09350 | Not Available | Negative | 2111505 - 2111783 | 11006.8 |
| hypothetical protein | DXB87_09355 | Not Available | Negative | 2111792 - 2112031 | 9054.92 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

