Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroquinate synthase | DXB87_09045 | Not Available | Positive | 2054577 - 2055638 | 39635.7 |
| Trna-pro | Not Available | Not Available | Positive | 2055747 - 2055821 | Not Available |
| type ii toxin-antitoxin system prevent-host-death family antitoxin | DXB87_09055 | Not Available | Positive | 2056049 - 2056339 | 10743.4 |
| txe/yoeb family addiction module toxin | DXB87_09060 | Not Available | Positive | 2056327 - 2056602 | 10812.0 |
| duf5119 domain-containing protein | DXB87_09070 | Not Available | Positive | 2057491 - 2058411 | 34229.2 |
| fimbrillin family protein | DXB87_09075 | Not Available | Positive | 2058455 - 2059564 | 40877.8 |
| transposase | DXB87_09080 | Not Available | Negative | 2059778 - 2061136 | 53027.0 |
| hypothetical protein | DXB87_09085 | Not Available | Negative | 2061711 - 2062643 | 35598.3 |
| hypothetical protein | DXB87_09090 | Not Available | Negative | 2062650 - 2063390 | 28692.6 |
| hypothetical protein | DXB87_09095 | Not Available | Negative | 2063542 - 2064165 | 24247.2 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

