Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXB87_08935 | Not Available | Positive | 2024109 - 2027264 | 114006.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_08940 | Not Available | Positive | 2027291 - 2028679 | 52236.0 |
| gtpase hflx | DXB87_08945 | Not Available | Positive | 2028763 - 2030019 | 47660.4 |
| duf4954 family protein | DXB87_08950 | Not Available | Positive | 2030032 - 2032023 | 74613.6 |
| tlpa family protein disulfide reductase | DXB87_08955 | Not Available | Positive | 2032086 - 2033588 | 55962.2 |
| fumarate hydratase | DXB87_08960 | Not Available | Positive | 2033688 - 2035331 | 60539.5 |
| transporter | DXB87_08965 | Not Available | Positive | 2035484 - 2036455 | 35649.7 |
| abc transporter atp-binding protein | DXB87_08970 | Not Available | Positive | 2036531 - 2038465 | 73857.9 |
| m13 family peptidase | DXB87_08975 | Not Available | Positive | 2038497 - 2040536 | 76162.1 |
| transposase | DXB87_08985 | Not Available | Negative | 2041893 - 2042240 | 13463.5 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

