Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotidyltransferase | DXB87_08885 | Not Available | Positive | 2001870 - 2002775 | 33633.1 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_08890 | Not Available | Negative | 2002993 - 2004453 | 55623.7 |
| susc/raga family tonb-linked outer membrane protein | DXB87_08895 | Not Available | Negative | 2004472 - 2007291 | 103641.0 |
| site-specific integrase | DXB87_08900 | Not Available | Negative | 2007714 - 2008877 | 45929.8 |
| susc/raga family tonb-linked outer membrane protein | DXB87_08905 | Not Available | Positive | 2009219 - 2012413 | 116180.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXB87_08910 | Not Available | Positive | 2012426 - 2014030 | 59077.1 |
| tonb-dependent receptor | DXB87_08915 | Not Available | Positive | 2014233 - 2017121 | 107392.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_08920 | Not Available | Positive | 2017133 - 2018569 | 53321.1 |
| susc/raga family tonb-linked outer membrane protein | DXB87_08925 | Not Available | Positive | 2019024 - 2022077 | 113159.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_08930 | Not Available | Positive | 2022090 - 2023742 | 61676.8 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

