Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding outer membrane lipoprotein susd | DXB87_08735 | Not Available | Positive | 1958927 - 1960594 | 63150.8 |
| susf/suse family outer membrane protein | DXB87_08740 | Not Available | Positive | 1960615 - 1961778 | 42659.8 |
| lps export abc transporter atp-binding protein | DXB87_08745 | Not Available | Negative | 1961843 - 1962661 | 30881.2 |
| abc transporter permease | DXB87_08750 | Not Available | Positive | 1962801 - 1963544 | 27384.5 |
| abc transporter atp-binding protein | DXB87_08755 | Not Available | Positive | 1963541 - 1964314 | 29088.2 |
| trigger factor | DXB87_08760 | Not Available | Positive | 1964521 - 1965867 | 51355.0 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DXB87_08765 | Not Available | Positive | 1966026 - 1966697 | 24841.7 |
| atp-dependent clp protease atp-binding subunit clpx | DXB87_08770 | Not Available | Positive | 1966729 - 1967979 | 46650.6 |
| dna helicase recq | DXB87_08775 | Not Available | Positive | 1968122 - 1970305 | 82051.4 |
| imp dehydrogenase | DXB87_08780 | Not Available | Positive | 1970469 - 1971944 | 52647.8 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

