Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 153861 - 153936 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 153968 - 154051 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 154080 - 154166 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 154172 - 154244 | Not Available |
| hypothetical protein | DXB87_00595 | Not Available | Positive | 154378 - 154593 | 7669.92 |
| riboflavin synthase | DXB87_00600 | Not Available | Positive | 154624 - 155229 | 22443.8 |
| yihy/virulence factor brkb family protein | DXB87_00605 | Not Available | Negative | 155301 - 156617 | 49725.9 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 156641 - 157003 | Not Available |
| pdz domain-containing protein | DXB87_00615 | Not Available | Positive | 157307 - 158803 | 53353.8 |
| rna polymerase sigma factor rpod/siga | DXB87_00620 | Not Available | Positive | 159060 - 159920 | 32835.4 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

