Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | DXB87_08685 | Not Available | Negative | 1941549 - 1942901 | 50728.6 |
| response regulator | DXB87_08690 | Not Available | Negative | 1942943 - 1945471 | 95337.0 |
| mate family efflux transporter | DXB87_08695 | Not Available | Negative | 1945475 - 1946800 | 48817.8 |
| insulinase family protein | DXB87_08700 | Not Available | Negative | 1946797 - 1948035 | 47288.8 |
| peptidylprolyl isomerase | DXB87_08705 | Not Available | Negative | 1948048 - 1948887 | 30947.2 |
| dna-binding protein | DXB87_08710 | Not Available | Negative | 1948955 - 1949596 | 24238.0 |
| hypothetical protein | DXB87_08715 | Not Available | Negative | 1949817 - 1951409 | 62031.8 |
| alpha-amylase | DXB87_08720 | Not Available | Positive | 1951588 - 1953441 | 70842.9 |
| glycoside hydrolase family 97 protein | DXB87_08725 | Not Available | Positive | 1953620 - 1955800 | 83319.2 |
| tonb-dependent receptor | DXB87_08730 | Not Available | Positive | 1955893 - 1958904 | 111117.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

