Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| blai/meci/copy family transcriptional regulator | DXB87_08535 | Not Available | Positive | 1911482 - 1911844 | 13982.7 |
| tlpa family protein disulfide reductase | DXB87_08540 | Not Available | Positive | 1911841 - 1912596 | 28653.3 |
| m56 family peptidase | DXB87_08545 | Not Available | Positive | 1912660 - 1914555 | 70925.7 |
| altronate dehydratase | DXB87_08550 | Not Available | Negative | 1914637 - 1916130 | 54391.9 |
| laci family dna-binding transcriptional regulator | DXB87_08555 | Not Available | Negative | 1916152 - 1917228 | 41261.2 |
| sugar kinase | DXB87_08560 | Not Available | Positive | 1917446 - 1918468 | 37002.7 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | DXB87_08565 | Not Available | Positive | 1918507 - 1919175 | 23929.3 |
| nif3-like dinuclear metal center hexameric protein | DXB87_08570 | Not Available | Positive | 1919359 - 1920453 | 40635.8 |
| hypothetical protein | DXB87_08575 | Not Available | Positive | 1920460 - 1921251 | 30629.0 |
| hypothetical protein | DXB87_08580 | Not Available | Negative | 1921319 - 1921768 | 17618.4 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

