Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine protease | DXB87_08485 | Not Available | Negative | 1901567 - 1903270 | 63224.2 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | DXB87_08490 | Not Available | Negative | 1903300 - 1904049 | 27404.2 |
| dna repair protein recn | DXB87_08495 | Not Available | Negative | 1904068 - 1905735 | 62016.0 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | DXB87_08500 | Not Available | Negative | 1905742 - 1906947 | 43511.6 |
| 3'-5' exonuclease | DXB87_08505 | Not Available | Negative | 1906960 - 1907736 | 29378.8 |
| dna polymerase iii subunit beta | DXB87_08510 | Not Available | Negative | 1907761 - 1908885 | 41464.6 |
| duf3127 domain-containing protein | DXB87_08515 | Not Available | Positive | 1909062 - 1909433 | 14117.6 |
| hypothetical protein | DXB87_08520 | Not Available | Positive | 1910009 - 1910206 | 7077.09 |
| nucleotidyltransferase | DXB87_08525 | Not Available | Positive | 1910528 - 1910980 | 18178.7 |
| nucleotidyltransferase domain-containing protein | DXB87_08530 | Not Available | Positive | 1910983 - 1911291 | 11800.4 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

