Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase | DXB87_08335 | Not Available | Negative | 1868261 - 1868812 | 20829.6 |
| hypothetical protein | DXB87_08340 | Not Available | Negative | 1868796 - 1869341 | 20480.3 |
| duf4857 domain-containing protein | DXB87_08345 | Not Available | Negative | 1869361 - 1870602 | 47443.6 |
| hypothetical protein | DXB87_08350 | Not Available | Negative | 1870615 - 1871289 | 25153.9 |
| abc transporter atp-binding protein | DXB87_08355 | Not Available | Negative | 1871294 - 1872175 | 33792.0 |
| hypothetical protein | DXB87_08360 | Not Available | Negative | 1872201 - 1873805 | 59962.4 |
| duf4876 domain-containing protein | DXB87_08365 | Not Available | Negative | 1873808 - 1875133 | 48055.1 |
| tonb-dependent receptor | DXB87_08370 | Not Available | Negative | 1875140 - 1878076 | 108864.0 |
| Trna-lys | Not Available | Not Available | Positive | 1878269 - 1878344 | Not Available |
| port family protein | DXB87_08380 | Not Available | Negative | 1878539 - 1879123 | 21554.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

