Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ia dna topoisomerase | DXB87_08120 | Not Available | Positive | 1818981 - 1821068 | 77608.9 |
| mobilization protein | DXB87_08125 | Not Available | Negative | 1821250 - 1822014 | 28729.7 |
| site-specific integrase | DXB87_08130 | Not Available | Negative | 1822212 - 1823318 | 43170.5 |
| dna-binding protein | DXB87_08135 | Not Available | Negative | 1823411 - 1824322 | 35944.6 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DXB87_08140 | Not Available | Negative | 1824592 - 1826034 | 52565.8 |
| gaf domain-containing protein | DXB87_08145 | Not Available | Negative | 1826107 - 1826598 | 18166.6 |
| phosphorylase | DXB87_08150 | Not Available | Negative | 1826671 - 1827549 | 32280.7 |
| upf0365 family protein | DXB87_08155 | Not Available | Negative | 1827597 - 1828598 | 35890.6 |
| nodulation efficiency protein d (nfed) | DXB87_08160 | Not Available | Negative | 1828641 - 1829105 | 16657.6 |
| hypothetical protein | DXB87_08165 | Not Available | Negative | 1829119 - 1830537 | 54000.7 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

