Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxoacid:ferredoxin oxidoreductase subunit beta | DXB87_08065 | Not Available | Positive | 1811989 - 1812999 | 36697.7 |
| uracil phosphoribosyltransferase | DXB87_08070 | Not Available | Negative | 1813060 - 1813713 | 24334.1 |
| hypothetical protein | DXB87_08075 | Not Available | Negative | 1813742 - 1813972 | 8789.44 |
| site-specific integrase | DXB87_08080 | Not Available | Positive | 1814088 - 1815323 | 47891.2 |
| rhum protein | DXB87_08085 | Not Available | Positive | 1815335 - 1815697 | 13614.5 |
| dna-binding protein | DXB87_08090 | Not Available | Negative | 1815775 - 1816080 | 11724.1 |
| dna-binding protein | DXB87_08095 | Not Available | Negative | 1816112 - 1816411 | 11590.3 |
| hypothetical protein | DXB87_08100 | Not Available | Negative | 1816417 - 1816614 | 7273.61 |
| dna-binding protein | DXB87_08105 | Not Available | Positive | 1816613 - 1816975 | 14059.1 |
| dna-binding protein | DXB87_08110 | Not Available | Positive | 1816979 - 1817329 | 13925.0 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

