Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain OM06-2 OM06-2.Scaf63, whole genome
Gene Summary
Adenine Count
1073471 bp
Thymine Count
1083807 bp
Guanine Count
870519 bp
Cytosine Count
860999 bp
Genome Length
3889096 bp
Protein-coding Genes
3270 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 97 protein | DXB87_07910 | Not Available | Positive | 1770881 - 1772821 | 72964.6 |
| cysteine--trna ligase | DXB87_07915 | Not Available | Positive | 1772919 - 1774400 | 56143.0 |
| carbohydrate-binding protein | DXB87_07920 | Not Available | Negative | 1774475 - 1777045 | 97388.6 |
| duf1735 domain-containing protein | DXB87_07925 | Not Available | Negative | 1777129 - 1778514 | 49786.7 |
| ragb/susd family nutrient uptake outer membrane protein | DXB87_07930 | Not Available | Negative | 1778528 - 1780462 | 73299.8 |
| tonb-dependent receptor | DXB87_07935 | Not Available | Negative | 1780476 - 1783574 | 115476.0 |
| 6-phosphofructokinase | DXB87_07940 | Not Available | Negative | 1784105 - 1785115 | 35698.4 |
| hypothetical protein | DXB87_07945 | Not Available | Positive | 1785269 - 1786774 | 57487.0 |
| hypothetical protein | DXB87_07950 | Not Available | Positive | 1786784 - 1788709 | 73796.9 |
| duf3108 domain-containing protein | DXB87_07955 | Not Available | Positive | 1788706 - 1789521 | 31310.9 |
Pathways
165 pathways
Health Effects
No health effects information available for this bacterium.

